Index

_

__version__ (in module ddn3) _add_node_to_a_circle() (in module ddn3.visualize) (in module ddn3.visualize2) _angles_in_ellipse() (in module ddn3.visualize) (in module ddn3.visualize2) _create_nx_graph() (in module ddn3.visualize)

_draw_network_labels() (in module ddn3.visualize2) _get_edge_list() (in module ddn3.tools_export) _get_pos_one_part() (in module ddn3.visualize) (in module ddn3.visualize2) _get_pos_two_parts() (in module ddn3.visualize) _plot_network_helper() (in module ddn3.visualize)

B

bcd_corr() (in module ddn3.bcd) bcd_org() (in module ddn3.bcd)

bcd_org_old() (in module ddn3.bcd) bcd_residual() (in module ddn3.bcd)

C

calculate_regression() (in module ddn3.parameter_tuning) concatenate_data() (in module ddn3.tools) create_cov_prec_mat() (in module ddn3.simulation)

create_nx_graph() (in module ddn3.visualize2) create_pair_graph() (in module ddn3.simulation) cv_two_lambda() (in module ddn3.parameter_tuning)

D

ddn() (in module ddn3.ddn) ddn3 module ddn3.bcd module ddn3.ddn module ddn3.parameter_tuning module ddn3.performance module ddn3.pipeline module ddn3.simulation module ddn3.solver module

ddn3.strong_rule module ddn3.tools module ddn3.tools_export module ddn3.visualize module ddn3.visualize2 module ddn_obj_fun() (in module ddn3.tools) ddn_parallel() (in module ddn3.ddn) ddn_pipeline() (in module ddn3.pipeline) DDNParameterSearch (class in ddn3.parameter_tuning) draw_network_for_ddn() (in module ddn3.visualize) (in module ddn3.visualize2)

F

fit() (ddn3.parameter_tuning.DDNParameterSearch method)

G

gen_mv() (in module ddn3.tools) gen_sample_two_conditions() (in module ddn3.simulation) get_common_diff_net_topo() (in module ddn3.tools) get_diff_comm_net_for_plot() (in module ddn3.tools_export) get_edge_subset_by_name() (in module ddn3.tools_export) get_error_measure_two_theta() (in module ddn3.performance) get_f1() (in module ddn3.performance)

get_lambda1_mb() (in module ddn3.parameter_tuning) get_lambda2_bai() (in module ddn3.parameter_tuning) get_lambda_one_se_1d() (in module ddn3.parameter_tuning) get_lambdas_one_se_2d() (in module ddn3.parameter_tuning) get_net_topo_from_mat() (in module ddn3.tools) get_node_subset_by_name() (in module ddn3.tools_export) get_node_type_and_label_two_parts() (in module ddn3.tools_export) get_pos_multi_parts() (in module ddn3.visualize2)

L

lasso() (in module ddn3.strong_rule)

M

module ddn3 ddn3.bcd ddn3.ddn ddn3.parameter_tuning ddn3.performance ddn3.pipeline ddn3.simulation ddn3.solver ddn3.strong_rule ddn3.tools ddn3.tools_export ddn3.visualize ddn3.visualize2

P

plot_error_1d() (in module ddn3.parameter_tuning) plot_error_2d() (in module ddn3.parameter_tuning)

plot_network() (in module ddn3.visualize2) prep_sim_from_two_omega() (in module ddn3.simulation)

R

run_corr() (in module ddn3.solver) run_cv_bai() (ddn3.parameter_tuning.DDNParameterSearch method) run_cv_joint() (ddn3.parameter_tuning.DDNParameterSearch method) run_cv_sequential() (ddn3.parameter_tuning.DDNParameterSearch method)

run_mb_bai() (ddn3.parameter_tuning.DDNParameterSearch method) run_mb_cv() (ddn3.parameter_tuning.DDNParameterSearch method) run_org() (in module ddn3.solver) run_resi() (in module ddn3.solver) run_strongrule() (in module ddn3.solver)

S

scan_erro_measure_dingo() (in module ddn3.performance) scan_error_measure() (in module ddn3.performance) simple_data() (in module ddn3.simulation)

solve2d() (in module ddn3.bcd) standardize_data() (in module ddn3.tools) strong_rule() (in module ddn3.strong_rule)